How about Advanced Composites?
Add a Summons where the former Interest button was that spawns a Composite boss, then after killing that allows the Grenade and Ray towers to be upgraded further. Change the PTotE to 1 of each element or Composite 6. The bonus of going this route is that you never have a half damage type, but never do double damage to anything... unless, of course, you give one of these towers the special ability to crit.
Possible upgrades of the two towers could branch into things like (keeping their attack types. ie, Ray = Single target / Grenade = AoE) choosing to increase Range, Damage, Speed (Ray) / AoE (Grenade) or a Special Ability. They would get a damage increase regardless for being a higher level tower, just that choosing the Damage option increases it more while keeping the same range, speed/aoe and skipping an ability.
Giving them the selective upgrades and special abilities (each tower only allowed to gain 1 special) at each step would be the balance against the dual and triple element towers. Abilities like:
Shot bounces to an additional creep.Sticky bomb detonates upon creep death.Do a little less damage but slows creep(s) by X%.X damage per second for X seconds.
I realize these are abilities that are on other elemental towers, but just like picking certain combinations for long range, AoE and slow towers, a pure Composite player would pick the upgrades to fit the build/playstyle of their choice. For Composite bosses 1-3, the towers would have the choice of similar abilities to the Dual towers and 4-6 getting some of the Triple's. In the situation of the Well and Forge chains, have the composite tower that does such not have an attack of its own, but buffs the composite towers in a small radius with their effect.
While currently you can sell Composite towers (even the element-imbued version) for 100% of cost, this raises the concern of out-incoming elemental players. Easy fix! Once a tower has a Composite Modification to it, the tower now sells at the cost the elemental ones do!
Yay / Nay / Picking apart commentary?